Pôles techniques

Lagrangian approaches for a class of matching problems in computational biology

Nicola Yanev, Rumen Andonov, Philippe Veber, Stefan Balev

Computers & Mathematics with Applications . 55 ( Issue 5 (March 2008) ) : 1054-1067

DOI: 10.1016/j.camwa.2006.12.103

2008

Article dans une revue

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Inferring the role of transcription factors in regulatory networks

Philippe Veber, Carito Guziolowski, Michel Le Borgne, Ovidiu Radulescu, Anne Siegel

BMC Bioinformatics . 9 : nc

DOI: 10.1186/1471-2105-9-228

2008

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Recovery of king penguins from swimming induced hypothermia: effects of nutritional condition

L.G. Halsey, Y. Handrich, B. Rey, A. Fahlman, A.J. Woakes, P.J. Butler

Physiological and Biochemical Zoology . 81 : 434-441

2008

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Mitochondrial adaptations to steatohepatitis induced by a methionine- and choline-deficient diet

C. Romestaing, M.-A. Piquet, D. Letexier, B. Rey, M. Belouze, V. Rouleau...

AJP - Endocrinology and Metabolism . 294 : 110-119

2008

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Long-term fasting decreases mitochondrial avian UCP-mediated oxygen consumption in hypometabolic king penguins

B. Rey, L.G. Halsey, V. Dolmazon, J.L. Rouanet, D. Roussel, Y. Handrich...

AJP - Regulatory, Integrative and Comparative Physiology . 295 : R92-R100

2008

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Growing in Antarctica a challenge for white adipose tissue development in Adélie penguin chicks (Pygoscelis adeliae)

M. Raccurt, F. Baudimont, J. Tirard, B. Rey, E. Moureaux, A. Géloën...

AJP - Regulatory, Integrative and Comparative Physiology . 295 : 1671-1679

2008

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Spatial ordination of vegetation data using a generalization of Wartenberg's multivariate spatial correlation

S. Dray, S. Saïd, F. Débias

Journal of Vegetation Science . 19 : 45-56

2008

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Pervasive positive selection on duplicated and nonduplicated vertebrate protein coding genes

A. Studer, Simon Penel, L. Duret, M. Robinson-Rechavi

Genome Research . 18 : 1393-1402

2008

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Growing in Antarctica, a challenge for white adipose tissue development in Adelie penguin chicks (Pygoscelis adeliae).

Mireille Raccurt, Fannie Baudimont, Julien Tirard, Benjamin Rey, Elodie Moureaux, Alain Géloën...

AJP - Regulatory, Integrative and Comparative Physiology . 295 ( 5 ) : R1671-9

DOI: 10.1152/ajpregu.90371.2008

2008

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Behavioural manipulation of insect parasitoids by a maternally inherited virus: ecological consequences and potential applications for biological control

Julien Varaldi, S. Patot, M. Maache, D. Lepetit, Frédéric Fleury

Entomological Research . 37 : A11-A73

2007

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Détection de domaines dans des séquences génomiques : un problème de couverture optimale

Philippe Veber, Sébastien Tempel, Rumen Andonov, Dominique Lavenier, Jacques Nicolas

FRANCORO V/ROADEF 2007 .

2007

Acte de congrès

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Decision Diagrams for Qualitative Biological Models

Michel Le Borgne, Philippe Veber

: 17

2007

Rapport

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Checking Consistency Between Expression Data and Large Scale Regulatory Networks: A Case Study

Carito Guziolowski, Philippe Veber, Michel Le Borgne, Ovidiu Radulescu, Anne Siegel

: 14

2007

Rapport

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Inferring the role of transcription factors in regulatory networks

Philippe Veber, Carito Guziolowski, Michel Le Borgne, Ovidiu Radulescu, Anne Siegel

2007

Rapport

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Optimiser un plan d'expérience à partir de modèles qualitatifs?

Anne Siegel, Carito Guziolowski, Philippe Veber, Ovidiu Radulescu, Michel Le Borgne

Biofutur . 275 : 27-31

2007

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A Survey of the Bacteriophage WO in the Endosymbiotic Bacteria Wolbachia

L. Gavotte, H. Henri, R. Stouthamer, D. Charif, S. Charlat, M. Boulétreau...

Molecular Biology and Evolution . 24 : 427-435

2007

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Modélisation grande échelle de réseaux biologiques : vérification par contraintes booléennes de la cohérence des données

Philippe Veber

2007

Thèse

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Qualitative response of interaction networks: application to the validation of biological models

Anne Siegel, Carito Guziolowski, Philippe Veber, Ovidiu Radulescu, Michel Le Borgne

6th International Congress on Industrial and Applied Mathematics. ICIAM 07 . : nc

2007

Acte de congrès

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Checking Consistency Between Expression Data and Large Scale Regulatory Networks: A Case Study

Carito Guziolowski, Philippe Veber, Michel Le Borgne, Ovidiu Radulescu, Anne Siegel

Journal of Biological Physics and Chemistry . 7 : 37-43

2007

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Path-equivalent developments in acyclic weighted automata

Mathieu Giraud, Philippe Veber, Dominique Lavenier

International Journal of Foundations of Computer Science . 18 ( 4 ) : 799-812

DOI: 10.1142/S012905410700498X

2007

Article dans une revue

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Interaction between host genotype and environmental conditions affects bacterial density in Wolbachia symbiosis

L. Mouton, H. Henri, D. Charif, M. Boulétreau, F. Vavre

Biology Letters . 3 : 210-213

2007

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Qualitative, integrated modeling of lipid metabolism in hepatocytes

O Radulescu, A Siegel, Mathieu Le Borgne, Philippe Veber, E Pécou, Sandrine Lagarrigue...

7th International Conference on Systems Biology - Yokohama . : Inconnu

2006

Poster

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Topology and static response of interaction networks in molecular biology

Ovidiu Radulescu, Sandrine Lagarrigue, Anne Siegel, Philippe Veber, Michel Le Borgne

Journal of the Royal Society Interface . 3 ( 6 ) : 185 - 196

DOI: 10.1098/rsif.2005.0092

2006

Article dans une revue

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Lagrangian Approaches for a class of Matching Problems in Computational Biology

Nicola Yanev, Rumen Andonov, Philippe Veber, Stefan Balev

2006

Rapport

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Qualitative analysis of the relation between DNA microarray data and behavioral models of regulation networks

Anne Siegel, Ovidiu Radulescu, Michel Le Borgne, Philippe Veber, Julien Ouy, Sandrine Lagarrigue

BioSystems . 84 : 153-174

2006

Article dans une revue

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Lagrangian Approaches for a class of Matching Problems in Computational Biology

Nicola Yanev, Rumen Andonov, Philippe Veber, Stefan Balev

: 18

2006

Rapport

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ITTACA: a new database for integrated tumor transcriptome array and clinical data analysis

Adil El Filali, Séverine Lair, Catia Verbeke, Philippe La Rosa, François Radvanyi, Emmanuel Barillot

Nucleic Acids Research . 34 ( 90001 ) : D613-D616

DOI: 10.1093/nar/gkj022

2006

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Path-Equivalent Removal of Epsilon-Transitions

Dominique Lavenier, Philippe Veber, Mathieu Giraud

11th International Conference on Implementation and Application of Automata (CIAA 2006) . : 23--33

DOI: 10.1007/11812128_4

2006

Acte de congrès

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Effect of temperature on Wolbachia density and impact on cytoplasmic incompatibility

L. Mouton, H. Henri, M. Boulétreau, F. Vavre

Parasitology . 132 : 49-56

2006

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Origin and neofunctionalization of a Drosophila paternal effect gene essential for zygote viability.

Benjamin Loppin, David Lepetit, Steve Dorus, Pierre Couble, Timothy L Karr

Current Biology - CB . 15 ( 2 ) : 87-93

DOI: 10.1016/j.cub.2004.12.071

2005

Article dans une revue

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Publications

Lagrangian approaches for a class of matching problems in computational biology

Inferring the role of transcription factors in regulatory networks

Recovery of king penguins from swimming induced hypothermia: effects of nutritional condition

Mitochondrial adaptations to steatohepatitis induced by a methionine- and choline-deficient diet

Long-term fasting decreases mitochondrial avian UCP-mediated oxygen consumption in hypometabolic king penguins

Growing in Antarctica a challenge for white adipose tissue development in Adélie penguin chicks (Pygoscelis adeliae)

Spatial ordination of vegetation data using a generalization of Wartenberg's multivariate spatial correlation

Pervasive positive selection on duplicated and nonduplicated vertebrate protein coding genes

Growing in Antarctica, a challenge for white adipose tissue development in Adelie penguin chicks (Pygoscelis adeliae).

Behavioural manipulation of insect parasitoids by a maternally inherited virus: ecological consequences and potential applications for biological control

Détection de domaines dans des séquences génomiques : un problème de couverture optimale

Decision Diagrams for Qualitative Biological Models

Checking Consistency Between Expression Data and Large Scale Regulatory Networks: A Case Study

Inferring the role of transcription factors in regulatory networks

Optimiser un plan d'expérience à partir de modèles qualitatifs?

A Survey of the Bacteriophage WO in the Endosymbiotic Bacteria Wolbachia

Modélisation grande échelle de réseaux biologiques : vérification par contraintes booléennes de la cohérence des données

Qualitative response of interaction networks: application to the validation of biological models

Checking Consistency Between Expression Data and Large Scale Regulatory Networks: A Case Study

Path-equivalent developments in acyclic weighted automata

Interaction between host genotype and environmental conditions affects bacterial density in Wolbachia symbiosis

Qualitative, integrated modeling of lipid metabolism in hepatocytes

Topology and static response of interaction networks in molecular biology

Lagrangian Approaches for a class of Matching Problems in Computational Biology

Qualitative analysis of the relation between DNA microarray data and behavioral models of regulation networks

Lagrangian Approaches for a class of Matching Problems in Computational Biology

ITTACA: a new database for integrated tumor transcriptome array and clinical data analysis

Path-Equivalent Removal of Epsilon-Transitions

Effect of temperature on Wolbachia density and impact on cytoplasmic incompatibility

Origin and neofunctionalization of a Drosophila paternal effect gene essential for zygote viability.