University Claude Bernard Lyon 1 - Building Grégor Mendel - 1st floor - Office 51 (11.051)

 


 

As a software engineer, my core activity is to develop and maintain data analysis software to enhance and sustain research results. As an expert in the R language and its ecosystem, I am responsible for numerous R packages and shiny apps. To share my R-related skills, I design original training courses and take part in teaching programs. More broadly, I'm interested in tools for reproducible research and open science.

  • Position and responsibilities
    • Research Engineer, Normal Class, since 2023
    • Representative of the LBBE IT Department, since 2018
    • ITA / BIATSS representative on the UMR council, since 2017
  • Networks and IDs

Evolutionary Ecology

  • ade4 (Multivariate data analysis and graphical display) : CRAN -- GitHub -- book -- shiny app
  • ade4TkGUI (A Tcl/Tk GUI for some basic functions in the ade4 package) : CRAN -- GitHub
  • adegraphics (Graphical functionalities for the representation of multivariate data) : CRAN -- GitHub -- article -- talk
  • adephylo (Exploratory Analyses for the Phylogenetic Comparative Method) : CRAN --  GitHub
  • adespatial (Multivariate Multiscale Spatial Analysis) : CRAN -- GitHub
  • CINID (Package on the Curculionidae INstar IDentification) : CRAN -- article
  • Interatrix (Compute Chi-Square Measures with Corrections) : CRAN -- article
  • OnAge (Implements a likelihood ratio test of differential senescence onset between two groups) : CRAN -- web

 

  • Analysis of data from the International Tiger Studbook and from the International and North American Regional Studbooks for Ruffed Lemurs -- article -- article
  • AGEX (ANR-15-CE32-0002-01, 2015-2019)  -- article
  • Potenchêne (GIP-ECOFOR, 2014-2018) -- article
  • CoCoReCo (ANR JC09-470585, 2009-2012) -- article
  • DLVitis (ANR-08-GENM-0002, 2008-2011) -- article -- CRAN

Bioinformatics

Statistics and data analysis

  • fitdistrplus (Help to Fit of a Parametric Distribution to Non-Censored or Censored Data) : CRAN -- GitHub -- web
  • Mondrian (A Simple Graphical Representation of the Relative Occurrence and Co-Occurrence of Events) : CRAN -- GitHub -- shiny app
  • nlsMicrobio (Nonlinear Regression in Predictive Microbiology) : CRAN -- GitHub
  • nlstools (Tools for Nonlinear Regression Analysis) : CRAN -- GitHub

IT services

 

Professional networks and conferences

Trainings and Courses

Competition Jury

  • Concours externe ENS (2021) - BAP A- IE - Ingénieur·e biologiste en traitement des données
  • Concours externe INRA (2019) - Experte - BAP E - AI - Assistant·e statisticien·ne
  • Concours externe INRA (2019) - BAP E - IE - Administrateur·trice des systèmes d’information
  • Concours externe CNRS (2017) - Experte - BAP E - IE - Ingénieur·e en ingénierie logicielle - 2 postes

Supervision

  • Cassandra Bompard, stage M2, Développement d'un package R de visualisation (2023)
  • Eliane Schermer, stage M2 et thèse, Modélisation en écologie (2015-2019)
  • Luka Matsuda, stage L3, Bioinformatique, Statistique et Modélisation (2018)
  • Adrien Bessy, stage M2, Bioinformatique (2015)

Publications

Display of 1 to 26 publications on 26 in total