Siberchicot Aurélie

Evolutionary Ecology

• ade4 (Multivariate data analysis and graphical display): CRAN -- GitHub -- book
• ade4TkGUI (A Tcl/Tk GUI for some basic functions in the ade4 package): CRAN -- GitHub
• adegraphics (Graphical functionalities for the representation of multivariate data): CRAN -- GitHub -- article -- talk
• CINID (Package on the Curculionidae INstar IDentification): CRAN -- article
• Interatrix (Compute Chi-Square Measures with Corrections): CRAN -- article
• OnAge (Implements a likelihood ratio test of differential senescence onset between two groups): CRAN -- web

• Analysis of data from the International Tiger Studbook and from the International and North American Regional Studbooks for Ruffed Lemurs -- article -- article
• AGEX (ANR-15-CE32-0002-01, 2015-2019)  -- article
• Potenchêne (GIP-ECOFOR, 2014-2018) -- article
• CoCoReCo (ANR JC09-470585, 2009-2012) -- article
• DLVitis (ANR-08-GENM-0002, 2008-2011) -- article -- CRAN

Ecotoxicology

• GUTS-predict (General Unified Threshold Model of Survival): shiny app
• rbioacc (Inference and Prediction of ToxicoKinetic (TK) Models): CRAN --  GitHub -- article

Bioinformatics

• DRomics (Dose Response for Omics): CRAN -- GitHub -- shiny app -- web -- article -- IFB cloud appliance
• kissDE (Retrieves Condition-Specific Variants in RNA-Seq Data): Bioconductor -- GitHub
• LDcorSV (Linkage Disequilibrium Corrected by the Structure and the Relatedness): CRAN -- article
• MareyMap (Estimation of Meiotic Recombination Rates Using Marey Maps): CRAN -- GitHub -- web -- shiny app -- article
• phylter (Detect and Remove Outliers in Phylogenomics Datasets): CRAN -- GitHub

Statistics and data analysis

• fitdistrplus (Help to Fit of a Parametric Distribution to Non-Censored or Censored Data): CRAN -- GitHub -- web
• Mondrian (A Simple Graphical Representation of the Relative Occurrence and Co-Occurrence of Events): CRAN -- GitHub -- shiny app
• nlsMicrobio (Nonlinear Regression in Predictive Microbiology): CRAN -- GitHub
• nlstools (Tools for Nonlinear Regression Analysis): CRAN -- GitHub

IT services

• shiny server: http://lbbe-shiny.univ-lyon1.fr
• website of Statistics in Biology: http://pbil.univ-lyon1.fr/R/

Organization and Program Committee

• Preditox, Training school, 2020, 2021 & 2023, Lyon (scientific committee)
• 7èmes Rencontres R, Conference, juillet 2018, Rennes (programm commitee)
• R pour le calcul, CNRS National Training Action, octobre 2015, Aussois (co-organizer)
• 2èmes Rencontres R, Conference, juin 2013, Lyon (organization committee) -- article

Trainings and Courses

• UE Visualization of Biological Data, M2 Bio-informatique, Lyon
• Programming with R: from the simplest to the most complex, Groupe Lyon Calcul
• Build your own package in R, ANF CNRS

Competition Jury

• Concours externe ENS (2021) - BAP A- IE - Ingénieur·e biologiste en traitement des données
• Concours externe INRA (2019) - Experte - BAP E - AI - Assistant·e statisticien·ne
• Concours externe INRA (2019) - BAP E - IE - Administrateur·trice des systèmes d’information
• Concours externe CNRS (2017) - Experte - BAP E - IE - Ingénieur·e en ingénierie logicielle - 2 postes

Supervision

• Cassandra Bompard, stage M2, Développement d'un package R de visualisation (2023)
• Eliane Schermer, stage M2 et thèse, Modélisation en écologie (2015-2019)
• Luka Matsuda, stage L3, Bioinformatique, Statistique et Modélisation (2018)
• Adrien Bessy, stage M2, Bioinformatique (2015)