GECO Evolutionary and Computational Genomics

Bioinformatics, Phylogeny and Evolutionary Genomics Group

Baobab Group

Publications

Display of 601 to 630 publications on 1303 in total

Evidence for Transcript Networks Composed of Chimeric RNAs in Human Cells

Sarah Djebali, Julien Lagarde, Philipp Kapranov, Vincent Lacroix, Christelle Borel, Jonathan M. Mudge...

PLoS ONE . 7 : 1-22

Journal article

see the publication

Horizontal gene transfer of a chloroplast DnaJ-Fer protein to Thaumarchaeota and the evolutionary history of the DnaK chaperone system in Archea

C. Petitjean, D. Moreira, P. Lopez-Garcia, Céline Brochier-Armanet

BMC Evolutionary Biology . 12 : 226

DOI: 10.1186/1471-2148-12-226

Journal article

see the publication

Primate evolutionary history contribution to the deciphering of SIV/HIV origin and diversification

Bénédicte Lafay

Evolution Ottawa - 1th Joint Congress on Evolutionary Biology .

Conference paper

see the publication

De novo metagenomic assembly reveals abundant novel major lineage of Archaea in hypersaline microbial communities.

Priya Narasingarao, Sheila Podell, Juan A Ugalde, Céline Brochier-Armanet, Joanne B Emerson, Jochen J Brocks...

The International Society of Microbiologial Ecology Journal . 6 ( 1 ) : 81-93

DOI: 10.1038/ismej.2011.78

Journal article

see the publication

Interaction between Selection and Biased Gene Conversion in Mammalian Protein-Coding Sequence Evolution Revealed by a Phylogenetic Covariance Analysis

Nicolas Lartillot

Molecular Biology and Evolution . 30 : 356 - 368

DOI: 10.1093/molbev/mss231

Journal article

see the publication

Rapport du groupe de travail sur la gestion et le partage des données

Christine Gaspin, Dominique Pontier, Laurence Colinet, Frédéric Dardel, Alain Franc, Odile Hologne...

Report

see the publication

Rapid De Novo Evolution of X Chromosome Dosage Compensation in Silene latifolia a Plant with Young Sex Chromosomes

A. Muyle, N. Zemp, C. Deschamps, Sylvain Mousset, A. Wildmer, Gabriel Marais

PLoS Biology . 10 ( 4 ) : e1001308

DOI: 10.1371/journal.pbio.1001308

Journal article

see the publication

Structural and dynamical analysis of biological networks.

Cecilia C. Klein, Andrea Marino, Marie-France Sagot, Paulo Vieira Milreu, Matteo Brilli

Briefings in Functional Genomics and Proteomics . 14 : 309

DOI: 10.1093/bfgp/els030

Journal article

see the publication

BRASERO: A resource for benchmarking RNA secondary structure comparison algorithms

Julien Allali, Cédric Saule, Cedric Chauve, Yves d'Aubenton-Carafa, Alain Denise, Christine Drevet...

Advances in Bioinformatics . 2012 : 1-5

DOI: 10.1155/2012/893048

Journal article

see the publication

Lateral gene transfer as a support for the tree of life.

Sophie S Abby, Eric Tannier, Manolo Gouy, Vincent Daubin

Proceedings of the National Academy of Sciences of the United States of America . 109 ( 13 ) : 4962-4967

DOI: 10.1073/pnas.1116871109

Journal article

see the publication

High-quality sequence clustering guided by network topology and multiple alignment likelihood.

Vincent Miele, Simon Penel, Vincent Daubin, Franck Picard, Daniel Kahn, L. Duret

Bioinformatics . 28 ( 8 ) : 1078-85

DOI: 10.1093/bioinformatics/bts098

Journal article

see the publication

The evolution of gene expression levels in mammalian organs

David Brawand, Magali Soumillon, Anamaria Necsulea, Philippe Julien, Gábor Csárdi, Patrick Harrigan...

Nature . 478 ( 7369 ) : 343-348

DOI: 10.1038/nature10532

Journal article

see the publication

High-throughput sequencing of complete human mtDNA genomes from the Caucasus and West Asia: high diversity and demographic inferences.

Ivan Nasidze, Anna Schönberg, Christoph Theunert, Mingkun Li, Mark Stoneking

European Journal of Human Genetics .

DOI: 10.1038/ejhg.2011.62

Journal article

see the publication

Y-Chromosomal Variation in Sub-Saharan Africa: Insights Into the History of Niger-Congo Groups

C. de Filippo, C. Barbieri, M. Whitten, S. Mpoloka, E. Gunnarsdottir, K. Bostoen...

Molecular Biology and Evolution . 28 ( 3 ) : 1255-1269

DOI: 10.1093/molbev/msq312

Journal article

see the publication

Larger mitochondrial DNA than Y-chromosome differences between matrilocal and patrilocal groups from Sumatra

Ellen Dröfn Gunnarsdóttir, Madhusudan Nandineni, Mingkun Li, Sean Myles, David Gil, Brigitte Pakendorf...

Nature Communications . 2 : 228

DOI: 10.1038/ncomms1235

Journal article

see the publication

Substitution rate variation at human CpG sites correlates with non-CpG divergence, methylation level and GC content

Carina Mugal, Hans Ellegren

Genome Biology . 12 ( 6 ) : R58

DOI: 10.1186/gb-2011-12-6-r58

Journal article

see the publication

Analysis of the variability of human normal urine by 2D-GE reveals a "public" and a "private" proteome

Laurence Molina, Nicolas Salvetat, Randa Ben Ameur, Sabine Pérès, Nicolas Sommerer, Faycal Jarraya...

Journal of Proteomics . 75 ( 1 ) : 70 - 80

DOI: 10.1016/j.jprot.2011.06.031

Journal article

see the publication

ACoM: A classification method for elementary flux modes based on motif finding

Sabine Pérès, Francois Vallee, Marie M. Beurton-Aimar, Jean-Pierre Mazat

BioSystems . 103 ( 3 ) : 410-419

Journal article

see the publication

Lactase persistence in central Asia: phenotype, genotype, and evolution.

Evelyne Heyer, Lionel Brazier, Laure Ségurel, Tatiana Hegay, Frédéric Austerlitz, Lluis Quintana-Murci...

Human Biology . 83 ( 3 ) : 379-92

DOI: 10.3378/027.083.0304

Journal article

see the publication

The Case of the Fickle Fingers: How the PRDM9 Zinc Finger Protein Specifies Meiotic Recombination Hotspots in Humans

Laure Ségurel, Ellen Miranda Leffler, Molly M. Przeworski

PLoS Biology . 9 ( 12 ) : e1001211

DOI: 10.1371/journal.pbio.1001211

Journal article

see the publication

“ArthropodaCyc”: a BioCyc database powered by CycADS to study and compare the metabolism of arthropods

Patrice Baa-Puyoulet, Augusto Vellozo, Jaime Huerta-Cepas, Gérard Febvay, Toni Gabaldon, Marie-France Sagot...

5. Annual Arthropod Genomics Symposium “Arthropod Genomics 2011: Exploring Diversity, Relating Similarity” . : 33 p.

Poster

see the publication

Preventing dangerous nonsense: selection for robustness to transcriptional error in human genes.

Brian P. Cusack, Peter F. Arndt, L. Duret, Hugues Roest Crollius

PLoS Genetics . 7 ( 10 ) : e1002276

DOI: 10.1371/journal.pgen.1002276

Journal article

see the publication

Ftx is a non-coding RNA which affects Xist expression and chromatin structure within the X-inactivation center region

Corinne Chureau, Sophie Chantalat, Antonio Romito, Angélique Galvani, Laurent Duret, Philip Avner...

Human Molecular Genetics . 20 ( 4 ) : 705-718

DOI: 10.1093/hmg/ddq516

Journal article

see the publication

Meiotic recombination favors the spreading of deleterious mutations in human populations

Anamaria Necsulea, L. Duret, Alexandra Popa, David N. Cooper, Peter Stentson, Dominique Mouchiroud...

Human Mutation . 32 ( 2 ) : 198-206

DOI: 10.1002/humu.21407

Journal article

see the publication

Modélisation des systèmes biologiques, bioinformatique

Olivier Gascuel, P. Benas, C. Brun, D. Burnouf, Alexandre de Brevern, A. Denise...

Rapport de conjoncture 2010 du Comité national de la recherche scientifique . 978-2-271-07263-4 : chapitre 43, 845-858

Book chapter

see the publication

RNA-seq without a reference genome: a comparison of the mapping and the assembly approaches

M.-C. Carpentier, J. Charif, Vincent Lacroix, Marie-France Sagot, Fabrice Vavre

JOBIM .

Conference paper

see the publication

kisSplice, détection d'évènements d'épissages alternatifs dans les données RNA-seq

Gustavo Akio Tominaga Sacomoto, J. Kielbassa, Pavlos Antoniou, Rayan Chikhi, Raluca Uricaru, Marie-France Sagot...

: 12

Report

see the publication

Metabolic network comparison of bacteria in the context of symbiosis

Cecilia C. Klein, Ludovic Cottret, Hubert Charles, Christian Gautier, Ana T Vasconcelos, Vincent Lacroix...

Otto Warburg International Summer School and Research Symposium on Evolutionary Genomics .

Conference paper

see the publication

Telling Stories

Vicente Acuña, Etienne Birmele, Ludovic Cottret, Pierluigi Crescenzi, Fabien Jourdan, Vincent Lacroix...

ICALP 2011 satellite workshop: Graph Algorithms and Applications (GA) .

DOI: 10.1016/j.tcs.2012.07.023

Conference paper

see the publication

Bioinformatics developments for NGS data analysis at PRABI

F. Picard, Guy Perrière

EMBNet.journal . 17 : 12

Journal article

see the publication